The Tree Room : How to build a tree :
Trees as hypotheses
At the most basic level, phylogenetic trees represent hypotheses about evolutionary history. For example, the tree at left below represents the hypothesis that chimpanzees and bonobos are very closely related to one another and that, of the groups shown, humans are their closest living relatives. The tree at the right represents an alternative hypothesis, that gorillas are the closest relatives of chimpanzees and bonobos.
Two hypotheses about the relationships among some great apes. Evidence supports the hypotheses represented by the tree on the left.
Like any good hypothesis, an evolutionary tree is based on logic, background knowledge, and most importantly, evidence. For example, chimpanzees share many more genetic similarities with humans than they do with gorillas.1 Independent research has uncovered strong genetic evidence supporting the tree at the left above and suggesting that the hypothesis shown on the right should be rejected.2 All things considered, the tree at left does a better job of explaining the available evidence and so is accepted by scientists as an accurate hypothesis for the time being.